ELD - Effortless Landmark Detection

For further information, check out Usage Read installation instructions in Installation.

Getting started:

• Usage
  • Installation
  • Training
• Tutorial
  • Setting up environment
  • Downloading data
  • Downscale the data
  • Make sure the data have the same flip
  • Mask background
  • Crop non-tissue regions
  • Resize images to 128x128 and save it for training
  • Train model
  • Preprocess images into torch tensors
  • Load model and predict landmarks
  • Show landmarks
  • Scale back landmarks to original images
  • Zero pad all images so they have the same size
  • Plot original shaped images with their landmarks
  • Create destination image and landmarks for registration
  • Homography
  • Rigid transformation
  • Affine transform
  • Thin-plate splines
  • Comparision of registration methods

Examples:

• Unimodal
  • MOB HE imgs
  • MOB 3 gene data
  • MOB 100 genes
  • ISS data
• Multimodal
  • Developing Heart
  • SMA
• 3D
  • CODA prostate